ENM 1.0
Home  |   DynOmics 1.0  |   Tutorials  |   Theory  |   References  |   iGNM 2.0  |   ANM 2.0  |   NTHU site

Mobility ( → increase)
The structure is colored based on the size of fluctuations driven by the slowest two modes.

Results for your structure 4NIH.pdb:

Structural Dynamics:

help ANM

help GNM  
Correlation between observed and predicted fluctuations: 0.8

help GNM

help GNM

help

help GNM

Functional Sites Based on Dynamics:

help GNM

help GNM

help GNM

help

Results in plain text

Input file and parameters:
PDB title: CRYSTAL STRUCTURE OF ALKB E136L MUTANT PROTEIN WITH COFACTORS BOUND TO DSDNA CONTAINING M6A/A
PDB: 4NIH,    chain: all,    model No.: 1
Exp. method: X-RAY DIFFRACTION (1.37 Å)
Cutoff for GNM nodes: 7.3 Å
Distance scaling factor: 0
Number of system nodes: 274

  logl

Reference:  Li,H., Chang,YY, Lee,JY, Bahar,I. and Yang,LW. (2017) DynOmics: dynamics of structural proteome and beyond. Nucleic Acids Res., 45, W374-W380.

Contact:

The server is maintained by Dr. Hongchun Li in the Bahar Lab at the Department of Computational & Systems Biology at the University of Pittsburgh, School of Medicine, and sponsored by the NIH awards #5R01GM099738-04 and #5P41GM103712-03 and the funding #104-2113-M-007-019 from MOST to the Yang lab at the National Tsing Hua University, Taiwan.

For questions and comments please contact Hongchun Li.