ENM 1.0
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help Collective Motions of 5FN2.pdb
Mobility ( → increase)
The structure is colored based on the size of fluctuations driven by the ANM slow modes.
The correlation cosine between the ANM modes predicted with and w/o environment.
Note: The ANM modes for "Substructure-membrANM" along the ordinate of this map refer to the full spectrum of modes for the membrane protein - membrane complex (see more details in the tutorial).

type: size: px


Motion along mode with RMSD: Å

NMD file -> download and view ANM in VMD

Results in plain text

Input file and parameters:
PDB title: CRYO-EM STRUCTURE OF GAMMA SECRETASE IN COMPLEX WITH A DRUG DAPT
PDB: 5FN2,    chain: all,    model No.: 1
Exp. method: ELECTRON MICROSCOPY
Cutoff for ANM nodes: 15 Å
Number of system nodes: 1309, number of environment nodes: 1213
MembrANM: model with CG-membrane
System of environment ENM: (chain M)
 

  logl

Reference:  Li,H., Chang,YY, Lee,JY, Bahar,I. and Yang,LW. (2017) DynOmics: dynamics of structural proteome and beyond. Nucleic Acids Res., 45, W374-W380.

Contact:

The server is maintained by Dr. Hongchun Li in the Bahar Lab at the Department of Computational & Systems Biology at the University of Pittsburgh, School of Medicine, and sponsored by the NIH awards #5R01GM099738-04 and #5P41GM103712-03 and the funding #104-2113-M-007-019 from MOST to the Yang lab at the National Tsing Hua University, Taiwan.

For questions and comments please contact Hongchun Li.